| 09/09/06 | at | Tennessee | 30-31 |
| 09/23/06 | at | Wyoming | 31-24 |
| 09/30/06 | hosting | New Mexico | 24-7 |
| 10/07/06 | hosting | Navy | 17-24 |
| 10/12/06 | hosting | Colorado St | 24-21 |
| 10/21/06 | at | San Diego St | 12-19 |
| 10/28/06 | hosting | Brigham Young | 14-33 |
| 11/03/06 | at | Army | 43-7 |
| 11/11/06 | hosting | Notre Dame | 17-39 |
| 11/18/06 | hosting | Utah | 14-17 |
| 11/24/06 | at | UNLV | 39-42 |
| 12/02/06 | at | TCU | 14-38 |