| 09/02/06 | at | Arkansas St | 6-14 |
| 09/09/06 | hosting | Kent St | 17-14 OT |
| 09/16/06 | at | Texas A&M | 24-28 |
| 09/23/06 | at | Baylor | 27-20 OT |
| 09/30/06 | hosting | Rice | 14-48 |
| 10/07/06 | hosting | VMI | 62-7 |
| 10/14/06 | at | Connecticut | 7-21 |
| 10/21/06 | hosting | TCU | 17-31 |
| 10/28/06 | at | Tulane | 28-42 |
| 11/03/06 | hosting | Air Force | 7-43 |
| 11/18/06 | at | Notre Dame | 9-41 |
| 12/02/06 | at | Navy | 14-26 |