| 09/02/06 | at | Arizona | 13-16 |
| 09/09/06 | hosting | Tulsa | 49-24 |
| 09/16/06 | at | Boston College | 23-30 2OT |
| 09/23/06 | hosting | Utah St | 38-0 |
| 09/28/06 | at | TCU | 31-17 |
| 10/07/06 | hosting | San Diego St | 47-17 |
| 10/21/06 | hosting | UNLV | 52-7 |
| 10/28/06 | at | Air Force | 33-14 |
| 11/04/06 | at | Colorado St | 24-3 |
| 11/09/06 | hosting | Wyoming | 55-7 |
| 11/18/06 | hosting | New Mexico | 42-17 |
| 11/25/06 | at | Utah | 33-31 |
| 12/21/06 | hosting | Oregon | 38-8 |