| 08/31/06 | hosting | Temple | 9-3 OT |
| 09/09/06 | at | Bowling Green | 40-48 OT |
| 09/16/06 | at | Northern Illinois | 13-31 |
| 09/23/06 | at | Auburn | 7-38 |
| 10/07/06 | hosting | Ball St | 25-55 |
| 10/15/06 | hosting | Miami OH | 31-38 |
| 10/21/06 | at | Ohio U. | 7-42 |
| 10/28/06 | at | Boston College | 0-41 |
| 11/04/06 | hosting | Kent St | 41-14 |
| 11/09/06 | at | Akron | 16-31 |
| 11/18/06 | at | Wisconsin | 3-35 |
| 11/24/06 | hosting | Central Michigan | 28-55 |