| 09/02/06 | at | Jacksonville FL | 49-14 |
| 09/09/06 | hosting | Tennessee Tech | 30-26 |
| 09/16/06 | at | Tennessee-Martin | 9-35 |
| 09/23/06 | hosting | Appalachian St | 6-41 |
| 09/30/06 | at | SE Louisiana St | 28-21 |
| 10/14/06 | hosting | Glenville St | 31-23 |
| 10/21/06 | at | Liberty | 27-24 |
| 10/28/06 | hosting | VMI | 35-31 |
| 11/04/06 | at | Charleston Southern | 14-28 |
| 11/11/06 | hosting | Coastal Carolina | 24-52 |
| 11/18/06 | hosting | Wofford | 17-34 |