| 09/02/06 | hosting | Houston | 30-31 |
| 09/09/06 | at | UCLA | 16-26 |
| 09/16/06 | hosting | Texas | 7-52 |
| 09/23/06 | at | Florida St | 7-55 |
| 09/30/06 | at | Army | 48-14 |
| 10/07/06 | at | Tulane | 24-38 |
| 10/14/06 | hosting | Alabama-Birmingham | 34-33 |
| 10/21/06 | at | Central Florida | 40-29 |
| 11/04/06 | at | UTEP | 37-31 |
| 11/11/06 | at | Tulsa | 41-38 |
| 11/18/06 | hosting | East Carolina | 18-17 |
| 11/25/06 | hosting | SMU | 31-27 |
| 12/22/06 | at | Troy | 17-41 |