| 08/31/06 | hosting | UTEP | 27-34 |
| 09/16/06 | at | Wisconsin | 0-14 |
| 09/23/06 | hosting | Utah | 7-38 |
| 09/30/06 | at | San José St | 10-31 |
| 10/07/06 | at | Brigham Young | 17-47 |
| 10/21/06 | hosting | Air Force | 19-12 |
| 10/28/06 | hosting | Cal Poly SLO | 14-16 |
| 11/04/06 | at | Wyoming | 24-27 |
| 11/11/06 | hosting | UNLV | 21-7 |
| 11/18/06 | at | TCU | 0-52 |
| 11/25/06 | at | New Mexico | 14-41 |
| 12/02/06 | hosting | Colorado St | 17-6 |