| 09/02/06 | at | Texas A&M | 3-35 |
| 09/09/06 | hosting | Charleston Southern | 35-38 |
| 09/23/06 | at | Pittsburgh | 6-51 |
| 09/30/06 | hosting | Chattanooga | 24-21 |
| 10/07/06 | at | Wofford | 20-28 |
| 10/14/06 | at | Furman | 17-23 |
| 10/21/06 | hosting | Western Carolina | 30-27 |
| 10/28/06 | hosting | Georgia Southern | 24-21 |
| 11/04/06 | at | Appalachian St | 13-42 |
| 11/11/06 | hosting | VMI | 48-21 |
| 11/18/06 | at | Elon | 44-7 |