| 09/02/06 | at | Troy | 0-38 |
| 09/09/06 | hosting | Texas Southern | 9-10 |
| 09/16/06 | hosting | Arkansas-Pine Bluff | 31-13 |
| 09/23/06 | at | Alcorn St | 33-28 |
| 09/30/06 | at | Southern U. | 20-38 |
| 10/07/06 | hosting | Jackson St | 13-19 |
| 10/14/06 | at | Prairie View A&M | 10-7 |
| 10/28/06 | hosting | Alabama A&M | 13-21 |
| 11/04/06 | at | Grambling St | 35-16 |
| 11/11/06 | hosting | Mississippi Valley St | 25-20 |
| 11/23/06 | hosting | Tuskegee | 10-17 |