| 09/02/06 | at | Bethune-Cookman | 30-29 |
| 09/09/06 | hosting | Mississippi Valley St | 31-14 |
| 09/16/06 | at | Prairie View A&M | 23-26 |
| 09/23/06 | hosting | North Carolina Central | 20-27 |
| 09/30/06 | hosting | Alabama St | 38-20 |
| 10/07/06 | at | Alabama A&M | 21-28 |
| 10/14/06 | at | Jackson St | 28-31 |
| 10/21/06 | at | Alcorn St | 10-26 |
| 11/04/06 | hosting | Texas Southern | 34-17 |
| 11/11/06 | hosting | Arkansas-Pine Bluff | 20-45 |
| 11/25/06 | hosting | Grambling St | 21-17 |