| 08/31/06 | hosting | Henderson St | 39-6 |
| 09/09/06 | at | Illinois St | 3-18 |
| 09/16/06 | hosting | Missouri St | 16-14 |
| 09/23/06 | at | Stephen F. Austin | 37-35 |
| 09/30/06 | hosting | South Dakota | 24-0 |
| 10/07/06 | at | South Dakota St | 7-20 |
| 10/14/06 | at | UC-Davis | 13-33 |
| 10/19/06 | at | Sam Houston St | 38-30 |
| 11/04/06 | hosting | Southern Arkansas | 55-21 |
| 11/11/06 | hosting | Augustana SD | 37-13 |
| 11/18/06 | at | Georgia Southern | 34-31 |