| 08/31/06 | hosting | Quincy | 59-0 |
| 09/09/06 | hosting | Minnesota-Crookston | 66-6 |
| 09/16/06 | hosting | Minnesota-Duluth | 27-14 |
| 09/23/06 | at | St Cloud St | 20-10 |
| 09/30/06 | at | Central Arkansas | 0-24 |
| 10/07/06 | hosting | Central Washington | 10-7 |
| 10/14/06 | at | Western Washington | 42-10 |
| 10/21/06 | hosting | Augustana SD | 38-14 |
| 10/28/06 | at | Minn St-Mankato | 39-44 |
| 11/04/06 | hosting | Nebraska-Omaha | 45-28 |
| 11/11/06 | at | North Dakota | 26-33 |
| 11/18/06 | at | Northwood | 31-28 |
| 11/25/06 | at | Grand Valley St | 17-35 |