| 09/02/06 | at | Coastal Carolina | 23-20 |
| 09/09/06 | hosting | Towson | 17-24 |
| 09/16/06 | hosting | Presbyterian | 28-0 |
| 09/30/06 | at | Appalachian St | 21-45 |
| 10/07/06 | hosting | Western Carolina | 37-19 |
| 10/14/06 | at | Georgia Southern | 21-28 |
| 10/21/06 | hosting | Wofford | 21-35 |
| 10/28/06 | at | Chattanooga | 20-17 |
| 11/04/06 | hosting | Furman | 13-24 |
| 11/11/06 | at | North Carolina A&T | 45-0 |
| 11/18/06 | hosting | The Citadel | 7-44 |