| 08/31/06 | at | Bemidji St | 23-7 |
| 09/09/06 | hosting | Mary | 42-14 |
| 09/16/06 | at | South Dakota | 14-27 |
| 09/23/06 | hosting | Central Washington | 31-25 |
| 09/30/06 | at | Western Washington | 20-10 |
| 10/07/06 | hosting | Augustana SD | 7-35 |
| 10/14/06 | at | Minn St-Mankato | 16-13 |
| 10/21/06 | hosting | Nebraska-Omaha | 14-38 |
| 10/28/06 | at | North Dakota | 14-38 |
| 11/11/06 | hosting | St Cloud St | 29-24 |