| 08/31/06 | at | Humboldt St | 23-28 |
| 09/09/06 | hosting | Washburn | 16-13 |
| 09/16/06 | hosting | Nebraska-Omaha | 10-38 |
| 09/23/06 | at | North Dakota | 20-26 |
| 09/30/06 | hosting | Minnesota-Duluth | 10-20 |
| 10/07/06 | at | St Cloud St | 24-17 |
| 10/14/06 | hosting | South Dakota | 10-42 |
| 10/21/06 | hosting | Central Washington | 28-42 |
| 10/28/06 | hosting | Western Oregon | 17-14 |
| 11/04/06 | hosting | Augustana SD | 10-6 |
| 11/11/06 | at | Minn St-Mankato | 35-21 |