| 09/02/06 | hosting | Colorado Mines | 41-21 |
| 09/09/06 | at | Western Washington | 13-16 |
| 09/16/06 | at | Central Missouri | 14-10 |
| 09/23/06 | at | Fort Hays St | 37-7 |
| 09/30/06 | hosting | SW Baptist | 56-23 |
| 10/07/06 | at | Pittsburg St | 14-29 |
| 10/14/06 | hosting | NW Missouri St | 26-31 |
| 10/21/06 | at | Truman St | 7-21 |
| 10/28/06 | hosting | Emporia St | 37-6 |
| 11/04/06 | at | Missouri Southern | 14-13 |
| 11/11/06 | hosting | Missouri Western | 16-3 |