| 08/24/06 | at | Minn St-Mankato | 16-34 |
| 09/02/06 | at | Winona St | 13-24 |
| 09/16/06 | hosting | NW Missouri St | 10-31 |
| 09/23/06 | hosting | Central Missouri | 24-21 |
| 09/30/06 | at | Missouri Western | 13-38 |
| 10/07/06 | hosting | Missouri Southern | 35-28 |
| 10/14/06 | at | Emporia St | 14-13 |
| 10/21/06 | hosting | Washburn | 21-7 |
| 10/28/06 | at | Pittsburg St | 21-45 |
| 11/04/06 | hosting | SW Baptist | 45-28 |
| 11/11/06 | at | Fort Hays St | 40-15 |