| 09/02/06 | at | East Central OK | 52-12 |
| 09/09/06 | hosting | OK Panhandle St | 87-0 |
| 09/16/06 | at | Missouri Western | 35-48 |
| 09/23/06 | hosting | Missouri Southern | 48-24 |
| 09/30/06 | at | Emporia St | 59-57 |
| 10/07/06 | hosting | Washburn | 29-14 |
| 10/14/06 | at | Fort Hays St | 35-28 |
| 10/21/06 | hosting | SW Baptist | 63-20 |
| 10/28/06 | hosting | Truman St | 45-21 |
| 11/04/06 | at | NW Missouri St | 14-41 |
| 11/11/06 | hosting | Central Missouri | 35-30 |
| 12/02/06 | hosting | Bemidji St | 35-27 |