| 09/02/06 | at | Lincoln MO | 78-0 |
| 09/09/06 | hosting | Dakota St | 52-0 |
| 09/16/06 | hosting | Washburn | 10-14 |
| 09/23/06 | at | Truman St | 21-24 |
| 09/30/06 | at | Fort Hays St | 37-14 |
| 10/07/06 | hosting | Missouri Western | 20-30 |
| 10/14/06 | hosting | SW Baptist | 49-24 |
| 10/21/06 | at | Missouri Southern | 26-31 |
| 10/28/06 | hosting | NW Missouri St | 14-31 |
| 11/04/06 | hosting | Emporia St | 48-21 |
| 11/11/06 | at | Pittsburg St | 30-35 |