| 09/02/06 | at | Albion | 10-31 |
| 09/09/06 | hosting | Hanover | 30-20 |
| 09/16/06 | hosting | Robert Morris | 14-35 |
| 09/23/06 | hosting | Jacksonville FL | 7-31 |
| 09/30/06 | hosting | Dayton | 23-20 |
| 10/07/06 | at | San Diego | 3-56 |
| 10/14/06 | hosting | Drake | 0-29 |
| 10/21/06 | hosting | Valparaiso | 32-10 |
| 10/28/06 | at | Missouri-Rolla | 20-35 |
| 11/04/06 | hosting | Morehead St | 7-14 |
| 11/11/06 | at | Davidson | 10-50 |