| 09/02/06 | hosting | Robert Morris | 21-14 |
| 09/09/06 | at | Wittenberg | 35-28 |
| 09/23/06 | hosting | Austin Peay | 28-23 |
| 09/30/06 | at | Butler | 20-23 |
| 10/07/06 | hosting | Morehead St | 15-22 |
| 10/14/06 | at | Jacksonville FL | 21-28 |
| 10/21/06 | at | Davidson | 36-37 |
| 10/28/06 | hosting | Drake | 9-21 |
| 11/04/06 | hosting | Valparaiso | 51-7 |
| 11/11/06 | at | San Diego | 14-56 |