| 09/02/06 | at | Northern Colorado | 38-7 |
| 09/09/06 | at | TCU | 13-46 |
| 09/16/06 | at | Montana St | 45-0 |
| 09/23/06 | at | Youngstown St | 24-38 |
| 10/07/06 | at | Cal Poly SLO | 17-23 |
| 10/14/06 | hosting | Central Arkansas | 33-13 |
| 10/21/06 | hosting | Southern Utah | 27-7 |
| 10/28/06 | at | South Dakota St | 21-22 |
| 11/04/06 | hosting | North Dakota St | 24-28 |
| 11/18/06 | hosting | Sacramento St | 30-16 |
| 11/25/06 | hosting | San Diego | 37-27 |