| 08/31/06 | hosting | Slippery Rock | 51-21 |
| 09/09/06 | hosting | Maine | 34-14 |
| 09/16/06 | at | Penn State | 3-37 |
| 09/23/06 | hosting | UC-Davis | 38-24 |
| 09/30/06 | at | Missouri St | 37-10 |
| 10/07/06 | hosting | Indiana St | 55-17 |
| 10/14/06 | at | Western Illinois | 35-28 |
| 10/21/06 | hosting | Northern Iowa | 23-31 |
| 10/28/06 | at | Illinois St | 27-13 |
| 11/04/06 | hosting | Southern Illinois | 31-24 |
| 11/11/06 | at | Western Kentucky | 19-3 |
| 11/25/06 | hosting | James Madison | 35-31 |
| 12/02/06 | hosting | Illinois St | 28-21 |
| 12/09/06 | at | Appalachian St | 24-49 |