| 09/02/06 | hosting | Weber St | 30-6 |
| 09/09/06 | at | Colorado | 14-10 |
| 09/16/06 | at | Nevada | 10-28 |
| 09/30/06 | at | Fresno St | 35-23 |
| 10/07/06 | hosting | UNLV | 28-7 |
| 10/12/06 | at | Air Force | 21-24 |
| 10/21/06 | at | Wyoming | 0-24 |
| 10/28/06 | hosting | New Mexico | 19-20 |
| 11/04/06 | hosting | Brigham Young | 3-24 |
| 11/11/06 | at | Utah | 22-35 |
| 11/25/06 | hosting | TCU | 14-45 |
| 12/02/06 | at | San Diego St | 6-17 |