| 08/31/06 | hosting | Eastern Michigan | 38-20 |
| 09/09/06 | hosting | Indiana | 23-24 |
| 09/16/06 | at | Purdue | 28-38 |
| 09/23/06 | hosting | North Dakota St | 24-29 |
| 09/30/06 | hosting | Northern Illinois | 28-40 |
| 10/07/06 | at | Buffalo | 55-25 |
| 10/14/06 | at | Central Michigan | 7-18 |
| 10/21/06 | hosting | Western Michigan | 27-41 |
| 10/28/06 | at | Miami OH | 20-17 |
| 11/04/06 | at | Michigan | 26-34 |
| 11/14/06 | at | Toledo | 20-17 |
| 11/24/06 | hosting | Kent St | 30-6 |